Expression and Regulation of Plant Amino Acid Transporters and Their Application in Crop Genetic Improvement
2019-09-10BoPENGDongyanKONGLulu
Bo PENG Dongyan KONG Lulu
AbstractAmino acid transporters (AATs) play an important role in transport process of various amino acids, which are indispensable in plant growth and development, while many putative AATs have been identified and the complete genomic sequences of the important plants have already been completed by splicing and assembling. There is still little knowledge about the expression, regulation and various biological functions of AATs in plants, including the major food crops. This study mainly reviewed the expression, regulation and various biological functions of AATs in plants, and the application of AATs in crop genetic improvement was also prospected. Thus, this review will provide important information for genetic improvement of staple food crops in plants.
Key wordsAATs; Expression; Regulation; Function; Application
Received: June 29, 2018Accepted: September 30, 2018
Supported by National Natural Science Foundation of China (U1604110, U1404319, 31600992, 31801332); Key Project of Science and Technology in Henan Province (182102110442, 152102110036); Nanhu Scholars Program for Young Scholars of XYNU (2016054); Scientific Research Innovation Project for Postgraduate of XYNU (2018KYJJ47); Major Science and Technology Project in Henan Province (121100110200); National Innovation and Entrepreneurship Training Program for Undergraduates (201810477004); Student Research Fund Project of XYNU (2018DXS066); Key Scientific Research Projects of Universities in Henan Province (19A180030); Institute for Conservation and Utilization of Agrobioresources in Dabie Mountains.
Bo PENG (1980-), male, P. R. China, associate professor, devoted to research about genetic breeding of rice.
*Corresponding author. Email: pengbo@xynu.edu.cn; yhongyu92@163.com.
Amino acids play an important role in the growth, development and metabolism of plants, which is because amino acids are the basic components of various enzymes and proteins in plants, and are precursors or nitrogen sources for nucleic acids, chloroplasts, hormones and secondary metabolites in plants, which are essential for the growth and development in plants. Amino acids can be synthesized by plastids, cytoplasm, mitochondria and peroxisomes in roots or leaf cells of plants[1], and plants can also absorb amino acids directly from the soil or ultimately convert inorganic nitrogen into amino acids[2]. Some of the amino acids synthesized in plants or absorbed from outside are immediately metabolized, and some are temporarily stored or transported through the phloem to growing parts or sink organs of plants[3-4]. In all these processes, amino acid transporters (AATs) are essential. A large number of studies have also shown that AATs are a key regulatory gene family in plant metabolism[3-9], and amino acid transporters encoded by them play an important role in plant growth and development.
There are at least 5 AAT gene families, such as amino acidpolyaminecholine (APC) superfamily, sodiumdicarboxylate symporter (SDS) superfamily, neurotransmitter superfamily (NTS), amino acid transporter superfamily 1 (ATF1) and amino acid transporters within the major facilitator superfamily (MFS)[6]. In plants, APC transporter superfamily mainly include two gene families: Amino acid/auxin permease (AAAP) and APC families, of which AAAP family includes amino acid permeases (AAPs), lysinehistidinelike transporters (LHTs) and proline transporters (ProTs), γaminobutyric acid transporters (GATs), ANT1like aromatic, and neutral amino acid transporters and auxin transporters (AUXs )[1,6,8,11], and APC family included cationic amino acid transporters (CATs), amino acid/choline transporters (ACTs) and polyamine H+symporters (PHSs)[8,12-13].
In Arabidopsis thaliana, more than 60 AATs have been identified, and 85 AATs that may exist in rice are distributed on 12 chromosomes of rice. However, Most AATs belong to the AAAP superfamily, and some belong to the APC superfamily. Among them, many different AATs are relatively conservative[8]. In the past ten years, a great progress has been made on AATs in the field of plants, the research object has evolved from A. thaliana to important food crops, and more and more members in AAT gene family have bveen separated, cloned, and anazlyed for function in crops[9-12]. Therefore, this study reviewed recent advances on AATs in plant research, including expression, regulation, function, and application of AATs in genetic crop improvement, aiming at providing reference for the indepth study of AATs in plants, especially important food crops.
The Expression of AATs in Plants
Strategies for gene knockout or inhibition of gene expression are often used in the study of gene function, but these mutants do not necessarily produce desired effects when studying the function of A. thaliana AATs. For instance, there is no significant difference between the TDNAinserted mutant of AtAAP3 and the wild type under the same growth condition; and the phenotype of RNAi mutant of AtAAP1 is also the same of normal A. thaliana as control[4,13]. AtAAP2, AtAAP5 and AtAAP6 could be coexpressed with AtAAP3 in roots of A. thaliana, and the amino acid permeases encoded by these three genes and AtAAP3 transport similar amino acids in A. thaliana. Therefore, AtAAP2, AtAAP5 and AtAAP6 may complement the function of AtAAP3 to some extent[4]. Similarly, AtAAP5 is mainly expressed in prophyllum, flowers and seeds, which is similar to the expression pattern of AtAAP1, which might be due to that AtAAP5 can complement the function of AtAAP1 and cause no significant change in the phenotype of AtAAP1 mutant.
The study on the expression of AATs in plants is mainly based on RTPCR, qRTPCR, promoter promoterGUS chimeric expression, insitu hybridization, subcellular localization, immunohistochemistry and promoterGFP protein fusion[4,9,14]. AtAAP2, AtAAP4 and AtAAP5 are mainly experssed in prophyllum, stems and flowers; AtAAP1 is expressed in seeds of A. thaliana; and AtAAP2 is expressed in the microtubules of siliques, leaves, stems, pedicels and mature plants of A. thaliana, which may play an important role in the longdistance transport of amino acids[14-17]. AtAAP3 is mainly expressed in the microtubules of roots, and it is also observed to be transiently expressed in connective tissue before the stamen are split[24]. AtAAP6 is mainly expressed in roots and leaves, and it is also observed to be expressed in parenchyma of xylem. AtAAP6 has a strong affinity to acidic and neutral amino acids, and the amino acid content in the xylem is very low, suggesting that AtAAP3 may play an important role in the process of absorbing amino acids from the xylem[15,18-19]. AtAAP8 is expressed in young siliques and developing seeds, so it is likely to be involved in the transport of amino acids into seeds as well as AtAAP1[3,20].AtLHT1 gene is found to be expressed on root surface and in pollen, which may be involved in the process by which roots absorb amino acids from the soil, or participate in the process of transporting amino acids to sink organs[21]. AtLHT2 gene has a strong affinity to proline and aspartic acid and is specifically expressed in the tapetal layer of A. thaliana, which means that AtLHT2 gene may be involved in the transport of amino acids to spore cells[22]. Related studies have also been conducted on other AATs in A. thaliana[4,23-25], such as AtProT1, AtProT2, AtProT3, AtANT1 and the members in APC superfaimly, but their functions and regulatory network in growth and development of A. thaliana still need further study.
Recently, members of AAT gene family in rice were fully expressed and analyzed by three databases and qRTPCR methods[8]. It was found through rice EST database (http://www.ncbi.nlm.nih.gov/unigene/) that most AATs are expressed in rice, many genes are expressed at higher levels in stems, roots, leaves, ears and seeds, and some AATs in rice are specifically expressed. For example, OsBAT5 is specifically expressed in seeds; OsBAT4 is specifically expressed in stems; and OsLHT2, OsATL10 and OsLAT5 are specifically expressed in flowers of rice. It was found through the chip expression database of rice (http://signal.salk.edu/cgibin/RiceGE) that different genes often have different expression patterns, and the AATs in rice can be divided into 6 groups. According to massively parallel (signature sequencing tags, http://mpss.udel.edu/rice/), most AATs are expressed in rice, most of which have low expression levels, and only three genes are strongly expressed (OsAUX1, OsATL5 and OsATL15)[8]. Rice was subjected to nitrogen starvation treatment, and then the expression of AATs was detected. It was found that AATs had different expression patterns, suggesting that they may play important roles in absorption and distribution of nitrogen fertilizer[12]. It was found from the comparison of expression patterns of AATs in rice and A. Thaliana that 26 genes have similar expression patterns in rice and A. Thaliana, the correlation coefficients of homologous genes ranged from 0.7 to 0.9, and their evolutionary relationship was very close[8]. These findings provide important information for future study on expression, subcellular localization, functional analysis, and regulatory mechanisms of AATs in rice.
The Regulation of AATs in Plants
At present, studies on the regulation of AAT expression are mainly focused on the transcriptional level, and there is no experimental evidence to support that posttranscriptional regulation of AATs exists in plants or AATs are controlled by posttranscriptional modification. A large number of experimental data indicate that amino acid transport is regulated by environmental signals such as light, water, salt stress and nutrients[2-4, 26-32]. When some plants are treated with water or salt stress, proline transporter genes are upregulated, such as AtProT2 gene of A. thaliana, HvProT gene of barley, and McAAT1 gene of Mesembryanthemum crystallinum Linn.[23, 29, 32]. When A. thaliana is treated with water or salt stress, the expression levels of AtAAT6 and AtAAT4 are all reduced[23]. McAAT2 gene is induced to express when the epidermis of root tips and mature roots of M. crystallinum (a salttolerant plant) is under osmotic stress[32]. Researches have found that 21 genes in AATs are significantly upregulated or downregulated when rice is treated with abiotic stress (drought, salt or cold)[8]. OsAAP15, OsATL6 and OsANT3 genes are upregulated when rice is treated with drought, salt or cold stress; OsATL13, OsAAP6, OsAAP11, OsAAP13 and OsAAP5 genes are also upregulated during drought and salt stress treatment; two genes, OsGAT2 and OsCAT6 are upregulated under drought stress; and in salt stress treatment, three genes, OsANT4, OsBAT7 and OsATL11 are all upregulated[8]. Four genes, OsAUX1, OsAAP4, OsBAT4 and OsAAP8 are downregulated during drought, salt or cold stress treatment on rice, suggesting that they may play an important role in abiotic stress.
In A. thaliana, the attack of pathogens may influence the expression of AAT genes. For example, AtLHT1 gene is upregulated in the presence of a pathogen in A. thaliana, which may increase the level of glutamine in cytosol, which in turn affects salicylic acid signaling pathway and ultimately leads to weakening of disease resistance in A. thaliana[33]. Similarly, fungi on the mycorrhizal roots of Lotus corniculatus Linn. (model plant of Leguminosae) can induce the expression of LjLHT1 gene in roots. It was also found that the expression of AAT genes is affected to some extent when the nutrient conditions of plants (whether organic nitrogen or inorganic nitrogen) are changed[3, 23, 26]. When plants are mutated or suffer from overexpression, the transport process of amino acids also changes; and when the cells undergo senescence and apoptosis, their amino acid levels will also change[34-38], and these processes will affect the expression of specific AAT genes more or less in plants.
Amino acids are important not only to the synthesis of proteins or various enzymes, but also are the precursors of many key compounds (phytohormones and signaling molecules, etc.), such as some compounds that play important roles in the growth, development, metabolism and defense of organisms. Various AATs are located in the center of the complex metabolic regulation network (amino acid transport) between "source" and "storeroom"[39-45]. The activity of nitrogen transporters in plants has an important effect on upstream or downstream substances of various amino acid transporters, while the development of "storeroom" (small flowers, siliques, seeds or grain weight) and the metabolism of plant seeds are regulated by the activity of various amino acid transporters[35, 38-39]. If AATs in plants are mutated or overexpressed, some amino acids may act as signal molecules to cause a series of complex signaling reactions, to thereby alter gene expression, which ultimately leads to changes in phenotype[46-47]. However, which amino acid can be used as a signal molecule? And how is the signal molecule transmitted[3,48-51]? Problems including whether the amino acidpermeable enzymes (Ss1 and Gap1) and kinases (GCN2 kinase) exist in plants remain to be further studied.
Bo PENG et al. Expression and Regulation of Plant AATs and Their Application in Crop Genetic Improvement
The Functions of AATs in Plants
The cloning and functional analysis of AAT genes is most deeply studied in A. thaliana. Among the 8 members of AAP family (AtAAP1–AtAAP8), AtAAP3 and AtAAP5 proteins can transport acidic, neutral and basic amino acids, while other 6 members can generally transport neutral and acidic amino acids[1, 19, 52]. All of the AtAAPs have been localized on the plasma membrane so far, and are often accompanied by transmembrane transport of hydrogen ions when transporting amino acids[2]. AtAAPs participate in a series of physiological processes in plants, such as the absorption of amino acids in soil by roots and longdistance transport of amino acids[35, 38, 52, 53-54]. AtAAP1 gene is mainly expressed in leaves and endosperm and is involved in the transport of amino acids into roots and embryos[16, 35, 54]. AtAAP5 gene plays an important role in the process of absorbing amino acids by roots in soil, and may also be involved in the process of transporting amino acids to embryos[52]. AtAAP6 gene has been shown to play an important role in regulating the composition of molecular sieves by studying the AtAAP6 gene mutant[55]. AtAAP6 gene has been shown to play an important role in regulating the composition of molecular sieves by studying AtAAP6 gene mutants[55]. AtAAP8 gene may be involved in the process of transporting amino acids to endosperm and seeds during the early development of A. thaliana seeds[20]. Amino acid transporters in LHT gene family can transport acidic amino acids, neutral amino acids and basic amino acids, and they are found to be involved in the transport of amino acids from the cell wall into cells and the transport of organic nitrogen to root and mesophyll cells. There also have been reports showed that they participate in the transport of organic nitrogen to pollen and other reproductive organs[3, 22, 56-58]. In addition to studies of these amino acid transporters in A. thaliana, there are some studies in other plants[28, 36, 53], such as StAAP1, VfAAP1, VfAAP3, PvAAP1 and PtAAP11.
There are also functional studies of AATrelated genes in rice. Thirteen AATs were found in the mutant library of rice, and most of the mutants were found to not affect the yield traits such as tiller number and 1 000grain weight, while osaa49 could reduce rice yield by 37.7%[12]. Some mutants have an important inhibitory effect on the biomass of rice plants (such as mutant osaa5 and osaa7) or a promoting effect (such as mutant osaa24). Further studies have found that these mutants can change the ratio of carbon to nitrogen in rice seed and its relative content[12]. A gene (Bh4) that controls rice husks in black (in Oryza sativa) was also identified in rice and was found to encode an amino acid transporter. This gene has a 22bp deletion mutation in the third exon in cultivated rice, which will cause rice husk color to turn to pale yellow, and it is speculated that Bh4 may be related to domestication[7]. Recently, we cloned from a natural population in rice, a major QTL gene, OsAAP6, which controls the content of grain storage proteins in rice, and belongs to the amino acid permease gene subfamily in the amino acid transporter gene family[9]. OsAAP6 gene is a constitutively expressed gene, which is expressed at a relatively higher level in rice microtubule tissue. OsAAP6 regulates the grain nutritional quality of rice and affects its eating quality by regulating the synthesis and accumulation of grain storage protein and starch in rice, while how does OsAAP6 regulate this process still needs further study.
Application of AATs in Genetic Development of Crops
There are a variety of amino acids in plants that play a very important role in the growth, development and metabolism in plants. This is because amino acids are the basic components for synthesis of various enzymes and proteins, and amino acids are precursors or nitrogen donors of some substances that are important to plant development (such as nucleic acids, chloroplasts, hormones, and secondary metabolites)[59]. However, amino acid transporters play an important role in invivo or intercellular transport of amino acids. In the case of A. thaliana in the dicotyledon, a large number of AAT genes have been successfully isolated and cloned, and the function of these genes have been studied intensively; and in monocotyledonous rice, the members of AAT gene family have been identified in whole genome, their expression patterns and molecular features have been resolved and validated[8,12], and the related rice mutants have also been tested in the field[12]. Two AAT gene family members have been cloned from rice which is an important food crop, and their functions have been revealed[7,9]. They are found to play an extremely important role in crop genetic improvement. However, the molecular mechanism by which AATencoded amino acid transporters transport amino acids to or from cells is not well understood. How do AATs regulate their functions? And how do they play an important role in the amino acid signaling pathway? It is believed that with the rapid development of biotechnology and functional genomics, more and more AATs are isolated and cloned in model plants, and their biological functions will be gradually analyzed and applied to genetic improvement of major food crops, to accelerate the breeding process of highquality, highyield and multiresistant new crop varieties.
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Editor: Yingzhi GUANGProofreader: Xinxiu ZHU
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